Database
Spoligotype nomenclature
A binary code is assigned to each spoligotype pattern. Authoritative names for spoligotype patterns are defined as SB followed by a field of 4 digits (numerical code) supplied by the database.
The binary code could also be represented as a Hexadecimal or Octal codes (Dale et al., 2001).
Example:
Original pattern | |||||||||||||||||||||||||||||||||||||||||||
Binary code | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
Octal blocks | 100 | 111 | 110 | 111 | 111 | 011 | 110 | 111 | 111 | 111 | 000 | 011 | 010 | 000 | 0 | ||||||||||||||||||||||||||||
Octal code | 4 | 7 | 6 | 7 | 7 | 3 | 6 | 7 | 7 | 7 | 0 | 3 | 2 | 0 | 0 | ||||||||||||||||||||||||||||
Written as | 476773677703200 |
Original pattern | |||||||||||||||||||||||||||||||||||||||||||
Binary code | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
Hex blocks | 1001111 | 1011111 | 1011110 | 1111111 | 11000011 | 0100000 | |||||||||||||||||||||||||||||||||||||
Hex code | 4F | 5F | 5E | 7F | C3 | 20 | |||||||||||||||||||||||||||||||||||||
Written as | 4F-5F-5E-7F-C3-20 |